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C
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R
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S
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T
A
add_angle_unit_arg() (in module taurenmd.libs.libcli)
add_atom_selection_arg() (in module taurenmd.libs.libcli)
add_atom_selections_arg() (in module taurenmd.libs.libcli)
add_data_export_arg() (in module taurenmd.libs.libcli)
add_frame_list_arg() (in module taurenmd.libs.libcli)
add_insort_arg() (in module taurenmd.libs.libcli)
add_inverted_array() (in module taurenmd.libs.libcli)
add_output_dir_arg() (in module taurenmd.libs.libcli)
add_plane_selection_arg() (in module taurenmd.libs.libcli)
add_plot_arg() (in module taurenmd.libs.libcli)
add_prefix_to_path() (in module taurenmd.libs.libio)
add_reference() (in module taurenmd.core)
add_reference_frame_arg() (in module taurenmd.libs.libcli)
add_slice_arg() (in module taurenmd.libs.libcli)
add_subparser() (in module taurenmd.libs.libcli)
add_suffix_to_path() (in module taurenmd.libs.libio)
add_top_output_arg() (in module taurenmd.libs.libcli)
add_topology_arg() (in module taurenmd.libs.libcli)
add_traj_output_arg() (in module taurenmd.libs.libcli)
add_trajectories_arg() (in module taurenmd.libs.libcli)
add_trajectory_arg() (in module taurenmd.libs.libcli)
add_version_arg() (in module taurenmd.libs.libcli)
C
calc_plane_eq() (in module taurenmd.libs.libcalc)
calc_plane_normal() (in module taurenmd.libs.libcalc)
calc_planes_angle() (in module taurenmd.libs.libcalc)
calc_torsion_angles() (in module taurenmd.libs.libcalc)
convert_time_or_frame_to_frame() (in module taurenmd.libs.libmda)
convert_time_to_frame() (in module taurenmd.libs.libmda)
create_x_data() (in module taurenmd.libs.libmda)
CustomParser (class in taurenmd.libs.libcli)
D
draw_atom_label_from_atom_group() (in module taurenmd.libs.libmda)
E
error() (taurenmd.libs.libcli.CustomParser method)
evaluate_to_slice() (in module taurenmd.libs.libio)
export_data_to_file() (in module taurenmd.libs.libio)
F
frame_list() (in module taurenmd.libs.libio)
frame_slice() (in module taurenmd.libs.libio)
G
get_frame_list_from_slice() (in module taurenmd.libs.libmda)
get_frame_slices() (in module taurenmd.libs.libmda)
get_number() (in module taurenmd.libs.libio)
get_timestep() (in module taurenmd.libs.libmda)
I
imagemol_protocol1() (in module taurenmd.libs.libmdt)
imagemol_protocol2() (in module taurenmd.libs.libmdt)
increment() (taurenmd.libs.libcli.ProgressBar method)
L
load_args() (in module taurenmd.libs.libcli)
load_traj() (in module taurenmd.libs.libmdt)
load_universe() (in module taurenmd.libs.libmda)
M
maincli() (in module taurenmd.libs.libcli)
mda_rmsd() (in module taurenmd.libs.libcalc)
mda_rmsf() (in module taurenmd.libs.libcalc)
mdaalignto() (in module taurenmd.libs.libmda)
mk_frame_path() (in module taurenmd.libs.libio)
module
taurenmd.cli
taurenmd.core
taurenmd.libs
taurenmd.libs.libcalc
taurenmd.libs.libcli
taurenmd.libs.libio
taurenmd.libs.libmda
taurenmd.libs.libmdt
taurenmd.plots.labeldots
taurenmd.plots.plotparams
myparents() (taurenmd.core.Path method)
P
ParamsToDict (class in taurenmd.libs.libcli)
parse_top_output() (in module taurenmd.libs.libio)
Path (class in taurenmd.core)
plot() (in module taurenmd.plots.labeldots)
(in module taurenmd.plots.plotparams)
ProgressBar (class in taurenmd.libs.libcli)
R
ref_mda (in module taurenmd.core)
ref_mda_alignto (in module taurenmd.core)
ref_mda_selection (in module taurenmd.core)
ref_mda_unwrap (in module taurenmd.core)
ref_mdt (in module taurenmd.core)
ref_numpy (in module taurenmd.core)
ref_openmm (in module taurenmd.core)
ref_taurenmd (in module taurenmd.core)
report() (in module taurenmd.libs.libmda)
report_input() (in module taurenmd.libs.libio)
represent_argument() (in module taurenmd.libs.libcli)
S
save_command() (in module taurenmd.libs.libcli)
save_references() (in module taurenmd.libs.libcli)
sort_numbered_input() (in module taurenmd.libs.libio)
str() (taurenmd.core.Path method)
T
taurenmd.cli
module
taurenmd.core
module
taurenmd.libs
module
taurenmd.libs.libcalc
module
taurenmd.libs.libcli
module
taurenmd.libs.libio
module
taurenmd.libs.libmda
module
taurenmd.libs.libmdt
module
taurenmd.plots.labeldots
module
taurenmd.plots.plotparams
module
torsion_set() (in module taurenmd.libs.libcalc)
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